![]() The read name includes the chromosome, start coordinate, alignment quality, and the match descriptor string. Alignments in the alignments section are associated with specific information in the header section.Īlignments-Contains read name, read sequence, read quality, alignment information, and custom tags. Header-Contains information about the entire file, such as sample name, sample length, and alignment method. In multi-node mode, the S# is set to S1, regardless the order of the sample.īAM files contain a header section and an alignment section: ▶ ![]() īAM files use the file naming format of SampleName_S#.bam, where # is the sample number determined by the order that samples are listed for the run. ![]() SAM and BAM formats are described in detail at. ![]() A BAM file (*.bam) is the compressed binary version of a SAM file that is used to represent aligned sequences up to 128 Mb. ![]()
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